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Probing the collective vibrational dynamics of a protein in liquid water by terahertz absorption spectroscopy

机译:太赫兹吸收光谱法研究液态水中蛋白质的集体振动动力学

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摘要

Biological polymers are expected to exhibit functionally relevant, global, and subglobal collective modes in the terahertz (THz) frequency range (i.e., picosecond timescale). In an effort to monitor these collective motions, we have experimentally determined the absorption spectrum of solvated bovine serum albumin (BSA) from 0.3 to 3.72 THz (10–124 cm−1). We successfully extract the terahertz molar absorption of the solvated BSA from the much stronger attenuation of water and observe in the solvated protein a dense, overlapping spectrum of vibrational modes that increases monotonically with increasing frequency. We see no evidence of distinct, strong, spectral features, suggesting that no specific collective vibrations dominate the protein's spectrum of motions, consistent with the predictions of molecular dynamics simulations and normal mode analyses of a range of small proteins. The shape of the observed spectrum resembles the ideal quadratic spectral density expected for a disordered ionic solid, indicating that the terahertz normal mode density of the solvated BSA may be modeled, to first order, as that of a three-dimensional elastic nanoparticle with an aperiodic charge distribution. Nevertheless, there are important detailed departures from that of a disordered inorganic solid or the normal mode densities predicted for several smaller proteins. These departures are presumably the spectral features arising from the unique molecular details of the solvated BSA. The techniques used here and measurements have the potential to experimentally confront theoretical calculations on a frequency scale that is important for macromolecular motions in a biologically relevant water environment.
机译:预计生物聚合物将在太赫兹(THz)频率范围(即皮秒级时标)中显示功能相关的全局模式和全局全局模式。为了监控这些集体运动,我们通过实验确定了溶剂化牛血清白蛋白(BSA)的吸收光谱,其吸收光谱为0.3至3.72 THz(10–124 cm-1)。我们成功地从更强的水衰减中提取了溶剂化BSA的太赫兹摩尔吸收,并在溶剂化蛋白中观察到了密集,重叠的振动模态,其振动频率随频率单调增加。我们没有发现明显,强烈的光谱特征的证据,这表明没有特定的集体振动支配蛋白质的运动光谱,这与分子动力学模拟的预测和一系列小蛋白质的正常模式分析相符。观察到的光谱的形状类似于无序离子固体预期的理想二次光谱密度,表明溶剂化BSA的太赫兹法向模密度可以建模为一阶,就像具有非周期性的三维弹性纳米颗粒的模型一样电荷分配。然而,与无序的无机固体或预测的几种较小蛋白质的正常模式密度相比,有许多重要的细节偏离。这些偏离可能是由溶剂化BSA的独特分子细节引起的光谱特征。此处使用的技术和测量方法有可能在频率尺度上实验性地对抗理论计算,这对于生物相关的水环境中的大分子运动很重要。

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